A quick example of a mini-application made using the new JChempaint renderer: the picture is of an isomer space (C 3 H 7 NO), with compact mode on and atoms rendered as circles. The code is here, for now: http://gist.github.com/70342 which is a kind of dumb way to achieve this, as it creates an instance of a renderer for each molecule, instead of adding them to a molecule set, and then laying that out... edit: just realised; it's rendering the hydrogens as compact black circles :( edit2: Ahhh. that's better: edit3: Ha! This was a mistake, but it looks kind of cool:
An Online Research Notebook